PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CMZ60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 318aa    MW: 35931.1 Da    PI: 8.3743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CMZ60genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-05147166120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  Aradu.CMZ60 147 FSCPLCFKTFNRYNNMQMHM 166
                  89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66147174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-5147166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-5213251No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4218251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTNNPYYLNN NGYWFDLNSP SSTYVFGSNH ESPPRREALP LLNKLSPSRS TSSRPQDLES  60
SFGAMEVKEK HKRGDDGDES VTVALHLGLP ETRSKNMTCE EEVSAASVSQ EQEEGGGGGR  120
GSDSNSMNRG QYWIPTPAQI LIGPTQFSCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL  180
RGTQPTAMLR LPCYCCAPGC KNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCCKAF  240
AVRGDWRTHE KNCGKLWYCS CGSDFKHKRS LKDHIKAFGN GHKAYGIDSL DQDDNEPGSE  300
IDQENDHLSN STTHHHHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935383.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A151SUK81e-150A0A151SUK8_CAJCA; Protein TRANSPARENT TESTA 1
STRINGGLYMA15G03830.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein